Complete genome sequence analysis of chicken astrovirus isolate from India
Identifieur interne : 000F95 ( Main/Exploration ); précédent : 000F94; suivant : 000F96Complete genome sequence analysis of chicken astrovirus isolate from India
Auteurs : Amrutlal K. Patel ; Ramesh J. Pandit ; Jalpa R. Thakkar ; Ankit T. Hinsu ; Vinod C. Pandey ; Joy K. Pal ; Kantilal S. Prajapati ; Subhash J. Jakhesara ; Chaitanya G. JoshiSource :
- Veterinary Research Communications [ 0165-7380 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Avastrovirus, Génome viral, Épitopes.
- isolement et purification : Avastrovirus.
- Animaux, Avastrovirus, Inde, Poulets, Similitude de séquences d'acides nucléiques.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Epitopes.
- classification : Avastrovirus.
- genetics : Avastrovirus, Genome, Viral.
- isolation & purification : Avastrovirus.
- Animals, Chickens, India, Sequence Homology, Nucleic Acid.
Abstract
Chicken astroviruses have been known to cause severe disease in chickens leading to increased mortality and “white chicks” condition. Here we aim to characterize the causative agent of visceral gout suspected for astrovirus infection in broiler breeder chickens.
Total RNA isolated from allantoic fluid of SPF embryo passaged with infected chicken sample was sequenced by whole genome shotgun sequencing using ion-torrent PGM platform. The sequence was analysed for the presence of coding and non-coding features, its similarity with reported isolates and epitope analysis of capsid structural protein.
The consensus length of 7513 bp genome sequence of Indian isolate of chicken astrovirus was obtained after assembly of 14,121 high quality reads. The genome was comprised of 13 bp 5′-UTR, three open reading frames (ORFs) including ORF1a encoding serine protease, ORF1b encoding RNA dependent RNA polymerase (RdRp) and ORF2 encoding capsid protein, and 298 bp of 3′-UTR which harboured two corona virus stem loop II like “s2m” motifs and a poly A stretch of 19 nucleotides. The genetic analysis of CAstV/INDIA/ANAND/2016 suggested highest sequence similarity of 86.94% with the chicken astrovirus isolate CAstV/GA2011 followed by 84.76% with CAstV/4175 and 74.48%% with CAstV/Poland/G059/2014 isolates. The capsid structural protein of CAstV/INDIA/ANAND/2016 showed 84.67% similarity with chicken astrovirus isolate CAstV/GA2011, 81.06% with CAstV/4175 and 41.18% with CAstV/Poland/G059/2014 isolates. However, the capsid protein sequence showed high degree of sequence identity at nucleotide level (98.64-99.32%) and at amino acids level (97.74–98.69%) with reported sequences of Indian isolates suggesting their common origin and limited sequence divergence. The epitope analysis by SVMTriP identified two unique epitopes in our isolate, seven shared epitopes among Indian isolates and two shared epitopes among all isolates except Poland isolate which carried all distinct epitopes.
The online version of this article (doi:10.1007/s11259-016-9673-6) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1007/s11259-016-9673-6
PubMed: 28012117
PubMed Central: 7088555
Affiliations:
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Patel</name><affiliation><nlm:aff id="Aff1">Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006 Gujarat India</nlm:aff><wicri:noCountry code="subfield">380006 Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Pandit, Ramesh J" sort="Pandit, Ramesh J" uniqKey="Pandit R" first="Ramesh J." last="Pandit">Ramesh J. Pandit</name><affiliation><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Animal Biotechnology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Thakkar, Jalpa R" sort="Thakkar, Jalpa R" uniqKey="Thakkar J" first="Jalpa R." last="Thakkar">Jalpa R. Thakkar</name><affiliation><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Animal Biotechnology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Hinsu, Ankit T" sort="Hinsu, Ankit T" uniqKey="Hinsu A" first="Ankit T." last="Hinsu">Ankit T. Hinsu</name><affiliation><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Animal Biotechnology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Pandey, Vinod C" sort="Pandey, Vinod C" uniqKey="Pandey V" first="Vinod C." last="Pandey">Vinod C. Pandey</name><affiliation><nlm:aff id="Aff1">Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006 Gujarat India</nlm:aff><wicri:noCountry code="subfield">380006 Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Pal, Joy K" sort="Pal, Joy K" uniqKey="Pal J" first="Joy K." last="Pal">Joy K. Pal</name><affiliation><nlm:aff id="Aff1">Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006 Gujarat India</nlm:aff><wicri:noCountry code="subfield">380006 Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Prajapati, Kantilal S" sort="Prajapati, Kantilal S" uniqKey="Prajapati K" first="Kantilal S." last="Prajapati">Kantilal S. Prajapati</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Veterinary Pathology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Jakhesara, Subhash J" sort="Jakhesara, Subhash J" uniqKey="Jakhesara S" first="Subhash J." last="Jakhesara">Subhash J. Jakhesara</name><affiliation><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Animal Biotechnology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author><author><name sortKey="Joshi, Chaitanya G" sort="Joshi, Chaitanya G" uniqKey="Joshi C" first="Chaitanya G." last="Joshi">Chaitanya G. Joshi</name><affiliation><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.411373.3</institution-id><institution-id institution-id-type="ISNI">0000000417942950</institution-id><institution>Department of Animal Biotechnology,</institution><institution>Anand Agricultural University,</institution></institution-wrap>Anand, Gujarat India</nlm:aff><wicri:noCountry code="subfield">Gujarat India</wicri:noCountry></affiliation></author></analytic><series><title level="j">Veterinary Research Communications</title><idno type="ISSN">0165-7380</idno><idno type="eISSN">1573-7446</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Avastrovirus (classification)</term><term>Avastrovirus (genetics)</term><term>Avastrovirus (isolation & purification)</term><term>Chickens</term><term>Epitopes (genetics)</term><term>Genome, Viral (genetics)</term><term>India</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Avastrovirus ()</term><term>Avastrovirus (génétique)</term><term>Avastrovirus (isolement et purification)</term><term>Génome viral (génétique)</term><term>Inde</term><term>Poulets</term><term>Similitude de séquences d'acides nucléiques</term><term>Épitopes (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Epitopes</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Avastrovirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Avastrovirus</term><term>Genome, Viral</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Avastrovirus</term><term>Génome viral</term><term>Épitopes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Avastrovirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Avastrovirus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Chickens</term><term>India</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Avastrovirus</term><term>Inde</term><term>Poulets</term><term>Similitude de séquences d'acides nucléiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Objective</title><p id="Par1">Chicken astroviruses have been known to cause severe disease in chickens leading to increased mortality and “white chicks” condition. Here we aim to characterize the causative agent of visceral gout suspected for astrovirus infection in broiler breeder chickens.</p></sec><sec><title>Methods</title><p id="Par2">Total RNA isolated from allantoic fluid of SPF embryo passaged with infected chicken sample was sequenced by whole genome shotgun sequencing using ion-torrent PGM platform. The sequence was analysed for the presence of coding and non-coding features, its similarity with reported isolates and epitope analysis of capsid structural protein.</p></sec><sec><title>Results</title><p id="Par3">The consensus length of 7513 bp genome sequence of Indian isolate of chicken astrovirus was obtained after assembly of 14,121 high quality reads. The genome was comprised of 13 bp 5′-UTR, three open reading frames (ORFs) including ORF1a encoding serine protease, ORF1b encoding RNA dependent RNA polymerase (RdRp) and ORF2 encoding capsid protein, and 298 bp of 3′-UTR which harboured two corona virus stem loop II like “s2m” motifs and a poly A stretch of 19 nucleotides. The genetic analysis of CAstV/INDIA/ANAND/2016 suggested highest sequence similarity of 86.94% with the chicken astrovirus isolate CAstV/GA2011 followed by 84.76% with CAstV/4175 and 74.48%% with CAstV/Poland/G059/2014 isolates. The capsid structural protein of CAstV/INDIA/ANAND/2016 showed 84.67% similarity with chicken astrovirus isolate CAstV/GA2011, 81.06% with CAstV/4175 and 41.18% with CAstV/Poland/G059/2014 isolates. However, the capsid protein sequence showed high degree of sequence identity at nucleotide level (98.64-99.32%) and at amino acids level (97.74–98.69%) with reported sequences of Indian isolates suggesting their common origin and limited sequence divergence. The epitope analysis by SVMTriP identified two unique epitopes in our isolate, seven shared epitopes among Indian isolates and two shared epitopes among all isolates except Poland isolate which carried all distinct epitopes.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1007/s11259-016-9673-6) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Ahmad, Ta" uniqKey="Ahmad T">TA Ahmad</name></author><author><name sortKey="Eweida, Ae" uniqKey="Eweida A">AE Eweida</name></author><author><name sortKey="Sheweita, Sa" uniqKey="Sheweita S">SA Sheweita</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alexander, Dj" uniqKey="Alexander D">DJ Alexander</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Asplin, Fd" uniqKey="Asplin F">FD 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Mase</name></author><author><name sortKey="Tsukamoto, K" uniqKey="Tsukamoto K">K Tsukamoto</name></author><author><name sortKey="Kubo, M" uniqKey="Kubo M">M Kubo</name></author><author><name sortKey="Morooka, A" uniqKey="Morooka A">A Morooka</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jonassen, Cm" uniqKey="Jonassen C">CM Jonassen</name></author><author><name sortKey="Jonassen, To" uniqKey="Jonassen T">TO Jonassen</name></author><author><name sortKey="Grinde, B" uniqKey="Grinde B">B Grinde</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jonassen, Cm" uniqKey="Jonassen C">CM Jonassen</name></author><author><name sortKey="Jonassen, Tt" uniqKey="Jonassen T">TT Jonassen</name></author><author><name sortKey="Sveen, Tm" uniqKey="Sveen T">TM Sveen</name></author><author><name sortKey="Grinde, B" uniqKey="Grinde B">B Grinde</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kang, Ki" uniqKey="Kang K">KI Kang</name></author><author><name sortKey="Icard, Ah" uniqKey="Icard A">AH Icard</name></author><author><name sortKey="Linnemann, E" uniqKey="Linnemann E">E Linnemann</name></author><author><name sortKey="Sellers, Hs" uniqKey="Sellers H">HS Sellers</name></author><author><name sortKey="Mundt, E" uniqKey="Mundt E">E Mundt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koci, Md" uniqKey="Koci M">MD Koci</name></author><author><name sortKey="Seal, Bs" uniqKey="Seal B">BS Seal</name></author><author><name sortKey="Schultz Cherry, S" uniqKey="Schultz Cherry S">S Schultz-Cherry</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Lee, A" uniqKey="Lee A">A Lee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, L" uniqKey="Li L">L Li</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, N" uniqKey="Liu N">N Liu</name></author><author><name sortKey="Wang, F" uniqKey="Wang F">F Wang</name></author><author><name sortKey="Zhang, D" uniqKey="Zhang D">D Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Madeley, C" uniqKey="Madeley C">C Madeley</name></author><author><name sortKey="Cosgrove, B" uniqKey="Cosgrove B">B Cosgrove</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Martella, V" uniqKey="Martella V">V Martella</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Matsui, Sm" uniqKey="Matsui S">SM Matsui</name></author><author><name sortKey="Greenberg, Hb" uniqKey="Greenberg H">HB Greenberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcnulty, Ms" uniqKey="Mcnulty M">MS McNulty</name></author><author><name sortKey="Curran, Wl" uniqKey="Curran W">WL Curran</name></author><author><name sortKey="Mcferran, Jb" uniqKey="Mcferran J">JB McFerran</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mendez, E" uniqKey="Mendez E">E Mendez</name></author><author><name sortKey="Aguirre Crespo, G" uniqKey="Aguirre Crespo G">G Aguirre-Crespo</name></author><author><name sortKey="Zavala, G" uniqKey="Zavala G">G Zavala</name></author><author><name sortKey="Arias, Cf" uniqKey="Arias C">CF Arias</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mor, Sk" uniqKey="Mor S">SK Mor</name></author><author><name sortKey="Abin, M" uniqKey="Abin M">M Abin</name></author><author><name sortKey="Costa, G" uniqKey="Costa G">G Costa</name></author><author><name sortKey="Durrani, A" uniqKey="Durrani A">A Durrani</name></author><author><name sortKey="Jindal, N" uniqKey="Jindal N">N Jindal</name></author><author><name sortKey="Goyal, Sm" uniqKey="Goyal S">SM Goyal</name></author><author><name sortKey="Patnayak, Dp" uniqKey="Patnayak D">DP Patnayak</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nawrocki, Ep" uniqKey="Nawrocki E">EP Nawrocki</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nunez, Lf" uniqKey="Nunez L">LF Nunez</name></author><author><name sortKey="Parra, Sh" uniqKey="Parra S">SH Parra</name></author><author><name sortKey="Mettifogo, E" uniqKey="Mettifogo E">E Mettifogo</name></author><author><name sortKey="Catroxo, Mh" uniqKey="Catroxo M">MH Catroxo</name></author><author><name sortKey="Astolfi Ferreira, Cs" uniqKey="Astolfi Ferreira C">CS Astolfi-Ferreira</name></author><author><name sortKey="Piantino Ferreira, Aj" uniqKey="Piantino Ferreira A">AJ Piantino Ferreira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nunez, Lf" uniqKey="Nunez L">LF Nunez</name></author><author><name sortKey="Santander Parra, Sh" uniqKey="Santander Parra S">SH Santander Parra</name></author><author><name sortKey="Carranza, C" uniqKey="Carranza C">C Carranza</name></author><author><name sortKey="Astolfi Ferreira, Cs" uniqKey="Astolfi Ferreira C">CS Astolfi-Ferreira</name></author><author><name sortKey="Buim, Mr" uniqKey="Buim M">MR Buim</name></author><author><name sortKey="Piantino Ferreira, Aj" uniqKey="Piantino Ferreira A">AJ Piantino Ferreira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pantin Jackwood, Mj" uniqKey="Pantin Jackwood M">MJ Pantin-Jackwood</name></author><author><name sortKey="Day, Jm" uniqKey="Day J">JM Day</name></author><author><name sortKey="Jackwood, Mw" uniqKey="Jackwood M">MW Jackwood</name></author><author><name sortKey="Spackman, E" uniqKey="Spackman E">E Spackman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Reuter, G" uniqKey="Reuter G">G Reuter</name></author><author><name sortKey="Pankovics, P" uniqKey="Pankovics P">P Pankovics</name></author><author><name sortKey="Delwart, E" uniqKey="Delwart E">E Delwart</name></author><author><name sortKey="Boros, A" uniqKey="Boros A">A Boros</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Saitou, N" uniqKey="Saitou N">N Saitou</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sajewicz Krukowska, J" uniqKey="Sajewicz Krukowska J">J Sajewicz-Krukowska</name></author><author><name sortKey="Domanska Blicharz, K" uniqKey="Domanska Blicharz K">K Domanska-Blicharz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sajewicz Krukowska, J" uniqKey="Sajewicz Krukowska J">J Sajewicz-Krukowska</name></author><author><name sortKey="Pac, K" uniqKey="Pac K">K Pac</name></author><author><name sortKey="Lisowska, A" uniqKey="Lisowska A">A Lisowska</name></author><author><name sortKey="Pikula, A" uniqKey="Pikula A">A Pikula</name></author><author><name sortKey="Minta, Z" uniqKey="Minta Z">Z Minta</name></author><author><name sortKey="Kroliczewska, B" uniqKey="Kroliczewska B">B Kroliczewska</name></author><author><name sortKey="Domanska Blicharz, K" uniqKey="Domanska Blicharz K">K Domanska-Blicharz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schlottau, K" uniqKey="Schlottau K">K Schlottau</name></author><author><name sortKey="Schulze, C" uniqKey="Schulze C">C Schulze</name></author><author><name sortKey="Bilk, S" uniqKey="Bilk S">S Bilk</name></author><author><name sortKey="Hanke, D" uniqKey="Hanke D">D Hanke</name></author><author><name sortKey="Hoper, D" uniqKey="Hoper D">D Hoper</name></author><author><name sortKey="Beer, M" uniqKey="Beer M">M Beer</name></author><author><name sortKey="Hoffmann, B" uniqKey="Hoffmann B">B Hoffmann</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schultz Cherry, S" uniqKey="Schultz Cherry S">S Schultz-Cherry</name></author><author><name sortKey="King, Dj" uniqKey="King D">DJ King</name></author><author><name sortKey="Koci, Md" uniqKey="Koci M">MD Koci</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shirai, J" uniqKey="Shirai J">J Shirai</name></author><author><name sortKey="Nakamura, K" uniqKey="Nakamura K">K Nakamura</name></author><author><name sortKey="Shinohara, K" uniqKey="Shinohara K">K Shinohara</name></author><author><name sortKey="Kawamura, H" uniqKey="Kawamura H">H Kawamura</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smits, Sl" uniqKey="Smits S">SL Smits</name></author><author><name sortKey="Van Leeuwen, M" uniqKey="Van Leeuwen M">M van Leeuwen</name></author><author><name sortKey="Kuiken, T" uniqKey="Kuiken T">T Kuiken</name></author><author><name sortKey="Hammer, As" uniqKey="Hammer A">AS Hammer</name></author><author><name sortKey="Simon, Jh" uniqKey="Simon J">JH Simon</name></author><author><name sortKey="Osterhaus, Ad" uniqKey="Osterhaus A">AD Osterhaus</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smyth, Vj" uniqKey="Smyth V">VJ Smyth</name></author><author><name sortKey="Jewhurst, Hl" uniqKey="Jewhurst H">HL Jewhurst</name></author><author><name sortKey="Adair, Bm" uniqKey="Adair B">BM Adair</name></author><author><name sortKey="Todd, D" uniqKey="Todd D">D Todd</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smyth, Vj" uniqKey="Smyth V">VJ Smyth</name></author><author><name sortKey="Jewhurst, Hl" uniqKey="Jewhurst H">HL Jewhurst</name></author><author><name sortKey="Wilkinson, Ds" uniqKey="Wilkinson D">DS Wilkinson</name></author><author><name sortKey="Adair, Bm" uniqKey="Adair B">BM Adair</name></author><author><name sortKey="Gordon, Aw" uniqKey="Gordon A">AW Gordon</name></author><author><name sortKey="Todd, D" uniqKey="Todd D">D Todd</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smyth, V" uniqKey="Smyth V">V Smyth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Soria Guerra, Re" uniqKey="Soria Guerra R">RE Soria-Guerra</name></author><author><name sortKey="Nieto Gomez, R" uniqKey="Nieto Gomez R">R Nieto-Gomez</name></author><author><name sortKey="Govea Alonso, Do" uniqKey="Govea Alonso D">DO Govea-Alonso</name></author><author><name sortKey="Rosales Mendoza, S" uniqKey="Rosales Mendoza S">S Rosales-Mendoza</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stothard, P" uniqKey="Stothard P">P Stothard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Strain, E" uniqKey="Strain E">E Strain</name></author><author><name sortKey="Kelley, La" uniqKey="Kelley L">LA Kelley</name></author><author><name sortKey="Schultz Cherry, S" uniqKey="Schultz Cherry S">S Schultz-Cherry</name></author><author><name sortKey="Muse, Sv" uniqKey="Muse S">SV Muse</name></author><author><name sortKey="Koci, Md" uniqKey="Koci M">MD Koci</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Takano, T" uniqKey="Takano T">T Takano</name></author><author><name sortKey="Takashina, M" uniqKey="Takashina M">M Takashina</name></author><author><name sortKey="Doki, T" uniqKey="Doki T">T Doki</name></author><author><name sortKey="Hohdatsu, T" uniqKey="Hohdatsu T">T Hohdatsu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name></author><author><name sortKey="Peterson, D" uniqKey="Peterson D">D Peterson</name></author><author><name sortKey="Filipski, A" uniqKey="Filipski A">A Filipski</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tengs, T" uniqKey="Tengs T">T Tengs</name></author><author><name sortKey="Kristoffersen, Ab" uniqKey="Kristoffersen A">AB Kristoffersen</name></author><author><name sortKey="Bachvaroff, Tr" uniqKey="Bachvaroff T">TR Bachvaroff</name></author><author><name sortKey="Jonassen, Cm" uniqKey="Jonassen C">CM Jonassen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Todd, D" uniqKey="Todd D">D Todd</name></author><author><name sortKey="Wilkinson, Ds" uniqKey="Wilkinson D">DS Wilkinson</name></author><author><name sortKey="Jewhurst, Hl" uniqKey="Jewhurst H">HL Jewhurst</name></author><author><name sortKey="Wylie, M" uniqKey="Wylie M">M Wylie</name></author><author><name sortKey="Gordon, Aw" uniqKey="Gordon A">AW Gordon</name></author><author><name sortKey="Adair, Bm" uniqKey="Adair B">BM Adair</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yao, B" uniqKey="Yao B">B Yao</name></author><author><name sortKey="Zhang, L" uniqKey="Zhang L">L Zhang</name></author><author><name sortKey="Liang, S" uniqKey="Liang S">S Liang</name></author><author><name sortKey="Zhang, C" uniqKey="Zhang C">C Zhang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, W" uniqKey="Zhao W">W Zhao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, W" uniqKey="Zhao W">W Zhao</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Hinsu, Ankit T" sort="Hinsu, Ankit T" uniqKey="Hinsu A" first="Ankit T." last="Hinsu">Ankit T. Hinsu</name><name sortKey="Jakhesara, Subhash J" sort="Jakhesara, Subhash J" uniqKey="Jakhesara S" first="Subhash J." last="Jakhesara">Subhash J. Jakhesara</name><name sortKey="Joshi, Chaitanya G" sort="Joshi, Chaitanya G" uniqKey="Joshi C" first="Chaitanya G." last="Joshi">Chaitanya G. Joshi</name><name sortKey="Pal, Joy K" sort="Pal, Joy K" uniqKey="Pal J" first="Joy K." last="Pal">Joy K. Pal</name><name sortKey="Pandey, Vinod C" sort="Pandey, Vinod C" uniqKey="Pandey V" first="Vinod C." last="Pandey">Vinod C. Pandey</name><name sortKey="Pandit, Ramesh J" sort="Pandit, Ramesh J" uniqKey="Pandit R" first="Ramesh J." last="Pandit">Ramesh J. Pandit</name><name sortKey="Patel, Amrutlal K" sort="Patel, Amrutlal K" uniqKey="Patel A" first="Amrutlal K." last="Patel">Amrutlal K. Patel</name><name sortKey="Prajapati, Kantilal S" sort="Prajapati, Kantilal S" uniqKey="Prajapati K" first="Kantilal S." last="Prajapati">Kantilal S. Prajapati</name><name sortKey="Thakkar, Jalpa R" sort="Thakkar, Jalpa R" uniqKey="Thakkar J" first="Jalpa R." last="Thakkar">Jalpa R. Thakkar</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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